Given the computational challenges presented by the metagenomic data deluge, coupled with the time-sensitive nature of problems specific to tracking pandemics and synthetic DNA screening, the Treangen lab strives to develop efficient and accurate computational solutions to emerging problems in these fields. Specifically, his research group focuses on the design, development, and implementation of novel algorithms, heuristics, and data structures to solve emerging computational research questions specific to biosecurity, infectious disease monitoring, and host-associated microbiome characterization. The Treangen lab is also dedicated to the dissemination and development of novel open-source bioinformatics methods, software, and pipelines, and to providing “hands on” research opportunities to Rice undergraduates.
PhD in Computer Science, 2008
Polytechnic University of Catalonia
MSc in Computer Science, 2006
Polytechnic University of Catalonia
BSc in Computer Science, 2002
University of Nebraska
Notable news and newsworthy notes
2018-2022
Background 16S rRNA based analysis is the established standard for elucidating microbial community composition. While short read 16S analyses are largely confined to genus-level resolution at best since only a portion of the gene is sequenced, full-length 16S sequences have the potential to provide species-level accuracy.
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